Journal:

Article Title: Polymorphic Amplified Typing Sequences Provide a Novel Approach to Escherichia coli O157:H7 Strain Typing

doi: 10.1128/JCM.40.4.1152-1159.2002

Figure Lengend Snippet: A phylogenetic analysis of O157 isolates with PATS and PFGE data. Dendrograms were constructed by the unweighted pair-group method with arithmetic means. PFGE gels were analyzed with Molecular Analyst Fingerprinting Plus software (Bio-Rad), and the data were exported as a band-matching table so that the two sets of data could be analyzed by the same method. (A) PATS dendrogram. The PATS profiles resolved the isolates into four major clusters. The genetic distance is indicated in increments of 0.01 below the dendrogram. (B) PFGE dendrogram. The PFGE profiles resolved the isolates into smaller clusters and showed greater genetic distances between the isolates.

Article Snippet: PFGE gels were analyzed with Molecular Analyst Fingerprinting Plus software (Bio-Rad), and the data were exported as a band-matching table so that the two sets of data could be analyzed by the same method. (A) PATS dendrogram.

Techniques: Construct, Software

Journal: RSC Advances

Article Title: Latin American databases of natural products: biodiversity and drug discovery against SARS-CoV-2 †

doi: 10.1039/d1ra01507a

Figure Lengend Snippet: Summary statistics of the pairwise similarity computed with MACCS/Tanimoto a

Article Snippet: The analysis of MACCS fingerprint and Tanimoto similarity indicated that LAIPNUDELSAV, PRINCETON_NP and INDOFINE_NP are more diverse and HIT NP and CHEBI are the least diverse; meanwhile, the metric MACSS/Cosine similarity index, HIMNP indicated greater diversity as the database reference while LATAM_DBS_NPs and REF_NP showed median values greater than 0.50, except for NUBBE_2V, SPECSNP and UPMANP2V which were less diverse, according to MACCS keys/Cosine similarity index. and show summary statistics of the pairwise similarity computed with MACCS/Tanimoto and MACCS/Cosine.

Techniques:

Journal: RSC Advances

Article Title: Latin American databases of natural products: biodiversity and drug discovery against SARS-CoV-2 †

doi: 10.1039/d1ra01507a

Figure Lengend Snippet: Summary statistics of the pairwise similarity computed with MACCS/Cosine a

Article Snippet: The analysis of MACCS fingerprint and Tanimoto similarity indicated that LAIPNUDELSAV, PRINCETON_NP and INDOFINE_NP are more diverse and HIT NP and CHEBI are the least diverse; meanwhile, the metric MACSS/Cosine similarity index, HIMNP indicated greater diversity as the database reference while LATAM_DBS_NPs and REF_NP showed median values greater than 0.50, except for NUBBE_2V, SPECSNP and UPMANP2V which were less diverse, according to MACCS keys/Cosine similarity index. and show summary statistics of the pairwise similarity computed with MACCS/Tanimoto and MACCS/Cosine.

Techniques:

Journal: RSC Advances

Article Title: Latin American databases of natural products: biodiversity and drug discovery against SARS-CoV-2 †

doi: 10.1039/d1ra01507a

Figure Lengend Snippet: Cumulative distribution function of the pairwise similarity distribution of the different data sets computed with MACCS-Tanimoto and Cosine.

Article Snippet: The analysis of MACCS fingerprint and Tanimoto similarity indicated that LAIPNUDELSAV, PRINCETON_NP and INDOFINE_NP are more diverse and HIT NP and CHEBI are the least diverse; meanwhile, the metric MACSS/Cosine similarity index, HIMNP indicated greater diversity as the database reference while LATAM_DBS_NPs and REF_NP showed median values greater than 0.50, except for NUBBE_2V, SPECSNP and UPMANP2V which were less diverse, according to MACCS keys/Cosine similarity index. and show summary statistics of the pairwise similarity computed with MACCS/Tanimoto and MACCS/Cosine.

Techniques: